PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021486
Common NameLOC102593434
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 340aa    MW: 38570.7 Da    PI: 5.3855
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021486genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30117177259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp ++eitY+g+H+++
  PGSC0003DMP400021486 117 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGSHTCN 177
                           8***************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28108178IPR003657WRKY domain
PROSITE profilePS5081121.54111179IPR003657WRKY domain
SuperFamilySSF1182906.67E-26115178IPR003657WRKY domain
SMARTSM007748.7E-41116178IPR003657WRKY domain
PfamPF031063.8E-27117176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDCGFNYEYN SLINELTQGL EHVKQLRASN KIQELDFHLQ MILSSFEKSL SILNWTSASV  60
TQTPLLVAPP ESSISVDENP KSDDQDFIYV SKKRKQMPTW SEQVRVSAEN GYEGPTDDGY  120
SWRKYGQKDI LGAKYPRSYY RCTYRLMQNC WATKQVQRSD DDPALFEITY KGSHTCNQTY  180
NCAAAATQPK SPEKHKHKKQ ANNPRTTPSN QMLANLQANL RVNTNDLDKK EATCSFPFSP  240
TFSGFVDENL HFQMSQVDDN LVGGYSPSFV SPTTPESSYF SLPTCQMNDS QRIYNVHHSE  300
SDLPDLFSAN TSSTSSPIIG LEFPLEHVEF DPNFSDFFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092950.0AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343875.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLM1AW240.0M1AW24_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000316950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-61WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]